DNA Damage Atlas


GSM4224502-ESC_line1_Chr7_APH_ExpG




Basic Information

Manual

Sample ID:   

SRR10733944


Source Project ID:   

GSE142289

Cell Type:   

mESC line1


Organism:   

Mus musculus


Strain:   

C57BL/6/129SVE


Treatment:   

Aphidicolin


Treatment Time:   

72hrs + 24hrs


Treatment Dose:   

0.2uM + 0.1uM


Genotype:   

Xrcc4-/- p53-/-


Targeted break:   

chr7 HTGTS bait


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr115862851458628930586288002244.11-
chr132472610524726422247263081963.3-
chr142752814827528496275283561707.12-
chr46008171460081991600817141531.91+
chrX1037496991037502251037498211075.64+
chr7140221246140221529140221246899.661+
chr17254517172545195725451744825.106+
chr8414280494142836641428161803.167+
chr8121236183121236405121236383764.577-
chrX371303853713068737130585749.387-
Download the Full Peak List



Motif Analysis

Manual





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