DNA Damage Atlas


GSM4224505-ESC_line1_Chr7_DMSO_ExpB




Basic Information

Manual

Sample ID:   

SRR10733947


Source Project ID:   

GSE142289

Cell Type:   

mESC line1


Organism:   

Mus musculus


Strain:   

C57BL/6/129SVE


Treatment:   

DMSO


Treatment Time:   

72hrs


Treatment Dose:   

1:590 diluted


Genotype:   

Xrcc4-/- p53-/-


Targeted break:   

chr7 HTGTS bait


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr3464505784645081846450599928.678+
chr14275281612752849427528260836.646+
chr10412316304123184041231840707.564-
chr7140221245140221476140221246643.24+
chr13247260872472642224726347554.434-
chr7742139037421456674214034532.274+
chr11586284975862893458628649510.029+
chr17254517272545201225451773456.192+
chr11841519488415223884152156448.327-
chr11105101510105101730105101730337.701-
Download the Full Peak List



Motif Analysis

Manual





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