DNA Damage Atlas


GSM4224519-ESC_line1_Chr12_DMSO_ExpD




Basic Information

Manual

Sample ID:   

SRR10733961


Source Project ID:   

GSE142289

Cell Type:   

mESC line1


Organism:   

Mus musculus


Strain:   

C57BL/6/129SVE


Treatment:   

DMSO


Treatment Time:   

72hrs


Treatment Dose:   

1:590 diluted


Genotype:   

Xrcc4-/- p53-/-


Targeted break:   

chr12 HTGTS bait


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr14931333639313356593133363628.922+
chr3610693576106956361069357493.368+
chr5122890076122890277122890276379.23-
chr5503953335039553450395333379.23+
chr10370874823708768437087482377.353+
chr4104979343104979545104979343377.353+
chr7110709350110709552110709350377.353+
chr3144384667144384870144384667375.494+
chr18330677523306795633067952373.654-
chr8108977168108977425108977368296.597-
Download the Full Peak List



Motif Analysis

Manual





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