DNA Damage Atlas


GSM4224525-ESC_line1_Chr15_DMSO_ExpB




Basic Information

Manual

Sample ID:   

SRR10733967


Source Project ID:   

GSE142289

Cell Type:   

mESC line1


Organism:   

Mus musculus


Strain:   

C57BL/6/129SVE


Treatment:   

DMSO


Treatment Time:   

72hrs


Treatment Dose:   

1:590 diluted


Genotype:   

Xrcc4-/- p53-/-


Targeted break:   

chr15 HTGTS bait


Layout:   

PAIRED


Instrument model:   

NextSeq 550


Technique:   

HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr163190204431902251319020455361.85+
chr79044181490442026904420202094.16-
chr51369826231369828261369828252077.65-
chr144581265845812872458128662074.58-
chr106044566060445864604458632067.47-
chr71305915711305917811305915731585.58+
chr128636227186362513863622861559.37+
chr21701035211701037241701035241312.2+
chr147484599074846196748461941293.09-
chr51040721631040723691040723631293.09-
Download the Full Peak List



Motif Analysis

Manual





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