DNA Damage Atlas


GSM4224533-ESC-NPC_line1_Chr7_DMSO_ExpB




Basic Information

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Sample ID:   

SRR10733975


Source Project ID:   

GSE142289

Cell Type:   

ESC-NPCs line 1


Organism:   

Mus musculus


Strain:   

C57BL/6/129SVE


Treatment:   

DMSO


Treatment Time:   

72hrs


Treatment Dose:   

1:590 diluted


Genotype:   

Xrcc4-/- p53-/-


Targeted break:   

chr7 HTGTS bait


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr84142816141428366414281611207.55+
chr14703530327035357570353342633.181-
chr13247260902472634724726347588.637-
chr1107265441107266771107266174558.38+
chr2161981811161982992161982485524.023-
chr18145548071455608514555418505.772-
chr11113174328113175589113174920403.529-
chr3464505784645081746450578402.799+
chr14275281552752857427528326393.872+
chrX460654484606591146065684386.145-
Download the Full Peak List



Motif Analysis

Manual





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