DNA Damage Atlas


GSM4224544-ESC-NPC_line1_Chr15_APH_ExpA




Basic Information

Manual

Sample ID:   

SRR10733986


Source Project ID:   

GSE142289

Cell Type:   

ESC-NPCs line 1


Organism:   

Mus musculus


Strain:   

C57BL/6/129SVE


Treatment:   

Aphidicolin


Treatment Time:   

72hrs + 24hrs


Treatment Dose:   

0.2uM + 0.1uM


Genotype:   

Xrcc4-/- p53-/-


Targeted break:   

chr15 HTGTS bait


Layout:   

PAIRED


Instrument model:   

NextSeq 550


Technique:   

HTGTS


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12863621418636251586362271909.592+
chr10604456626044588560445863508.501-
chrX844378088443804584437808378.784+
chr16319020443190225131902045319.553+
chr7130591572130591785130591573310.552+
chr2987030479870326498703050261.281+
chr10121763072121763281121763278248.675-
chr7132058363132059048132058606248.312+
chr16509626895096433050963783221.701+
chr12348015934804173480176219.759+
Download the Full Peak List



Motif Analysis

Manual





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