DNA Damage Atlas


GSM4224553-ESC_line_2_Chr7_APH_ExpB




Basic Information

Manual

Sample ID:   

SRR10733995


Source Project ID:   

GSE142289

Cell Type:   

mESC line2


Organism:   

Mus musculus


Strain:   

C57BL/6/129SVE


Treatment:   

Aphidicolin


Treatment Time:   

72hrs + 24hrs


Treatment Dose:   

0.2uM + 0.1uM


Genotype:   

Xrcc4-/- p53-/-


Targeted break:   

chr7 HTGTS bait


Layout:   

PAIRED


Instrument model:   

NextSeq 550


Technique:   

HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr71305915721305917801305915731479.79+
chr51369826211369828291369828251278-
chr101217630751217632811217632781018.74-
chr8414280124142836541428161753.041+
chr3464504464645081846450599752.189+
chr14458126594581287045812866729.374-
chr7904418149044202690442020725.933-
chr5146975792146975993146975792626.45+
chr5104072163104072369104072363611.245-
chr4108678986108679189108679186551.358-
Download the Full Peak List



Motif Analysis

Manual





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