DNA Damage Atlas


GSM4224564-ESC_line_2_Chr12_DMSO_ExpA




Basic Information

Manual

Sample ID:   

SRR10734006


Source Project ID:   

GSE142289

Cell Type:   

mESC line2


Organism:   

Mus musculus


Strain:   

C57BL/6/129SVE


Treatment:   

DMSO


Treatment Time:   

72hrs


Treatment Dose:   

1:590 diluted


Genotype:   

Xrcc4-/- p53-/-


Targeted break:   

chr12 HTGTS bait


Layout:   

PAIRED


Instrument model:   

NextSeq 550


Technique:   

HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr17285477912854799828547793594.486+
chrX395441853954439139544388469.363-
chr4126626418126626634126626619284.858-
chr1101032591101032793101032592217.572+
chr17992345299238209923652214.97-
chr17292276792922801729227679208.045+
chr9152911661529154215291368187.019-
chr7733068067330731073307077174.403+
chr1124761243124761447124761245172.351+
chr17284256352842583928425839172.351-
Download the Full Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab