DNA Damage Atlas


GSM4224569-ESC_line_2_Chr15_APH_ExpB




Basic Information

Manual

Sample ID:   

SRR10734011


Source Project ID:   

GSE142289

Cell Type:   

mESC line2


Organism:   

Mus musculus


Strain:   

C57BL/6/129SVE


Treatment:   

Aphidicolin


Treatment Time:   

72hrs + 24hrs


Treatment Dose:   

0.2uM + 0.1uM


Genotype:   

Xrcc4-/- p53-/-


Targeted break:   

chr15 HTGTS bait


Layout:   

PAIRED


Instrument model:   

NextSeq 550


Technique:   

HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr163190204431902251319020453462.42+
chr128636214186362514863622983312.94+
chr106044566260445864604458632936.38-
chrX8443780884438039844378081818.82+
chr51369826231369828291369828251679.63-
chr71305915721305917801305915731307.02+
chr115617020456170429561704251208.27-
chr147484599174846195748461941090.35-
chr179101869991018933910187111056.18+
chr7904418209044202590442024964.47-
Download the Full Peak List



Motif Analysis

Manual





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