DNA Damage Atlas


GSM4224594-ESC-NPC_line_2_Chr15_APH_ExpC




Basic Information

Manual

Sample ID:   

SRR10734036


Source Project ID:   

GSE142289

Cell Type:   

ESC-NPCs line 2


Organism:   

Mus musculus


Strain:   

C57BL/6/129SVE


Treatment:   

Aphidicolin


Treatment Time:   

72hrs + 24hrs


Treatment Dose:   

0.2uM + 0.1uM


Genotype:   

Xrcc4-/- p53-/-


Targeted break:   

chr15 HTGTS bait


Layout:   

PAIRED


Instrument model:   

NextSeq 550


Technique:   

HTGTS


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12863621418636251586362273904.29+
chr4833138708332046083317187605.199-
chr7132058372132058945132058604356.368+
chr10604456616044586460445863345.78-
chr16319020443190225031902044340.744+
chr7904418209044202890442020337.468-
chr11695796286958089669580375306.983+
chr15105461991055021010548573272.049+
chr6724362157243720672436459257.567-
chr5136982621136982825136982825250.244-
Download the Full Peak List



Motif Analysis

Manual





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