Sample Detail

Basic Information

Manual

Sample ID:

SRR10808237

Source Project ID:

GSE142777

Cell Type:

v-Abl pro-B cell

Organism:

Mus musculus

Treatment:

RAG2 nucleofected + STI-571

Treatment Time:

STI-571: 4days

Treatment Dose:

3uM STI-571

Genotype:

Rad21degron, Emu-Bcl2, RAG2 deficient

Layout:

PAIRED

Instrument model:

Illumina MiSeq

Technique:

LAM-HTGTS

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr12	113496127	113496972	113496330	541738	+
chr12	113434675	113435159	113434875	269308	+
chr12	113451871	113452330	113452072	218591	+
chr12	113476508	113476824	113476511	175386	+
chr12	113457532	113457815	113457533	145722	+
chr12	113489037	113489807	113489563	92643	+
chr12	113462190	113462434	113462193	92550.9	+
chr12	113471860	113472089	113471863	89765.6	+
chr12	113466985	113467416	113467185	58859.1	+
chr12	113485243	113485468	113485244	47275.3	+

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr12	113496134	113496617	113496330	922609	+
chr12	113489560	113489793	113489563	294946	+
chr12	113432983	113434186	113433480	8032.89	-
chr6	70723548	70723883	70723548	970.965	+

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download