DNA Damage Atlas

GSM4252117-JH4_CTCFdegron_IAA_b_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10836737


Source Project ID:   

GSE142777

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

RAG2 nucleofected + STI-571 + IAA


Treatment Time:   

IAA:6hrs + STI-571: 4days + IAA: 3days


Treatment Dose:   

3uM STI-571 + 500uM IAA


Genotype:   

CTCFdegron, Emu-Bcl2, RAG2 deficient


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113496103113496624113496336661940+
chr12113452076113452348113452078292163+
chr12113489567113489813113489569249316+
chr12113434690113435454113434881158108+
chr12113457538113457776113457539132048+
chr12113476515113476758113476517130755+
chr1211346718811346742111346719199230+
chr1211500246511500270811500246891443.1+
chr1211363068611363112611363089779921.5+
chr1211346219811346246311346219958774.5+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113496135113496602113496336686549+
chr12113434879113435106113434881362816+
chr12113452077113452298113452078228075+
chr12113489567113489790113489569189790+
chr12113630892113631115113630897166725+
chr12113476516113476746113476517129951+
chr12113645197113645423113645205123144+
chr12113723277113723504113723284113588+
chr1211500246711500268511500246893633.6+
chr1211345753811345775711345753987714+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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