DNA Damage Atlas


GSM4252137-JH4_CTCFdegron_IAA_b_rep5




Basic Information

Manual

Sample ID:   

SRR10836757


Source Project ID:   

GSE142777

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

RAG2 nucleofected + STI-571


Treatment Time:   

STI-571: 4days


Treatment Dose:   

3uM STI-571


Genotype:   

CTCFdegron, Emu-Bcl2, RAG2 deficient


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113434874113435153113434881511659+
chr12113489566113489806113489569297753+
chr12113495998113496914113496336278139+
chr12113476514113476747113476517200125+
chr12113451879113452319113452078181563+
chr12113457538113457787113457539125671+
chr12113630693113631128113630897113005+
chr1211346719011346743511346719180027.5+
chr1211346219611346244011346219977822.8+
chr1211344940211344964611344940459633.4+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113496135113496602113496336686549+
chr12113434879113435106113434881362816+
chr12113452077113452298113452078228075+
chr12113489567113489790113489569189790+
chr12113630892113631115113630897166725+
chr12113476516113476746113476517129951+
chr12113645197113645423113645205123144+
chr12113723277113723504113723284113588+
chr1211500246711500268511500246893633.6+
chr1211345753811345775711345753987714+
Download the Full Merged Peak List



Motif Analysis

Manual





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