DNA Damage Atlas

GSM4252139-JH4_CTCFdegron_IAA_b_rep6

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR10836759


Source Project ID:   

GSE142777

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

RAG2 nucleofected + STI-571 + IAA


Treatment Time:   

IAA:6hrs + STI-571: 4days + IAA: 3days


Treatment Dose:   

3uM STI-571 + 500uM IAA


Genotype:   

CTCFdegron, Emu-Bcl2, RAG2 deficient


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113496135113496639113496336685378+
chr12113476514113476761113476517152301+
chr12113451868113452335113452078138991+
chr12113457538113457774113457539100725+
chr1211363068811363121711363089790198.9+
chr1211346718811346743511346719172412.9+
chr1211346219711346242711346219970490.4+
chr1211348904411348981711348956966056.4+
chr1211500227011500272811500246862357.8+
chr1211372305811372352411372328461534.9+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113496135113496602113496336686549+
chr12113434879113435106113434881362816+
chr12113452077113452298113452078228075+
chr12113489567113489790113489569189790+
chr12113630892113631115113630897166725+
chr12113476516113476746113476517129951+
chr12113645197113645423113645205123144+
chr12113723277113723504113723284113588+
chr1211500246711500268511500246893633.6+
chr1211345753811345775711345753987714+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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