DNA Damage Atlas

GSM4260259-EdU-cont_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10874225


Source Project ID:   

GSE143481

Cell Type:   

DLD-1


Organism:   

Homo sapiens


Genotype:   

MTBP-mAID/MTBP-WT-FLAG


Cell Phase:   

G1


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

EdU-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA23156238102359383.9784/
rDNA28037293812855563.5804/
rDNA31092325873198149.595/
chrUn_gl00022013160913203213182540.0973/
rDNA12488141531373932.307/
rDNA42483462831.125/
rDNA41516424454217627.4731/
chrUn_gl00022012771112833512791224.8515/
rDNA62966722651924.2682/
chrUn_gl00022014271814323114292222.0418/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA28047288052855545.8348
rDNA23177238092359336.8351
rDNA31106325863198122.8073
rDNA14225147631443920.0081
chrUn_gl00022014271814323114292216.8036
chrUn_gl00022013161413200113182516.6335
rDNA41516423924217616.1019
rDNA15012077168114.3761
rDNA12505141531373914.0189
rDNA43783462813.4802
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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