DNA Damage Atlas

GSM4260260-EdU-cont_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10874226


Source Project ID:   

GSE143481

Cell Type:   

DLD-1


Organism:   

Homo sapiens


Genotype:   

MTBP-mAID/MTBP-WT-FLAG


Cell Phase:   

G1


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 4000


Technique:   

EdU-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA28047288212855928.3804/
rDNA23177238162358426.1703/
rDNA14221147631444918.0417/
rDNA31106326013201117.8215/
chrUn_gl00022014269414323214295515.8051/
rDNA12505141541376013.7508/
rDNA63156755655613.5277/
chr9_gl000199_random82860831588300812.3648/
rDNA19912203212011012.1276/
rDNA35083857368110.9639/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA28047288052855945.8348
rDNA23177238092358436.8351
rDNA31106325863201122.8073
rDNA14225147631444920.0081
chrUn_gl00022014271814323114295516.8036
chrUn_gl00022013161413200113180616.6335
rDNA41516423924217716.1019
rDNA15012077169614.3761
rDNA12505141531376014.0189
rDNA43783463313.4802
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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