DNA Damage Atlas

GSM4260261-EdU-cont_rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10874227


Source Project ID:   

GSE143481

Cell Type:   

DLD-1


Organism:   

Homo sapiens


Genotype:   

MTBP-mAID/MTBP-WT-FLAG


Cell Phase:   

G1


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 4000


Technique:   

EdU-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA28043288052856621.764/
rDNA23143238092359016.1219/
rDNA31093325863238611.464/
chrUn_gl00022014270014338614293810.6929/
rDNA40013424264215010.3092/
chr9_gl000199_random82867831478300610.2512/
rDNA3553635958357469.3209/
chr9_gl000199_random9132192105918769.22065/
rDNA1992320347201347.52184/
chrUn_gl0002201289191302901299266.90114/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA28047288052856645.8348
rDNA23177238092359036.8351
rDNA31106325863238622.8073
rDNA14225147631445720.0081
chrUn_gl00022014271814323114293816.8036
chrUn_gl00022013161413200113182216.6335
rDNA41516423924215016.1019
rDNA15012077168614.3761
rDNA12505141531374414.0189
rDNA43783464113.4802
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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