DNA Damage Atlas

GSM4260262-EdU-seq-WT_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10874228


Source Project ID:   

GSE143481

Cell Type:   

DLD-1


Organism:   

Homo sapiens


Genotype:   

MTBP-mAID/MTBP-WT-FLAG


Cell Phase:   

S


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

EdU-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA23153238142358482.4415/
rDNA28027293792857161.1928/
rDNA31078325953201656.46/
chrUn_gl00022013161913204713183242.5316/
rDNA12483156151373936.0648/
rDNA418112264233.9791/
chrUn_gl00022014270514330214294524.4324/
rDNA14483874168423.9535/
chrUn_gl00022013548813706213639823.0561/
rDNA16089170551643022.7097/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA23162238082358435.8063
rDNA28037292292857131.578
rDNA31097325953201627.8668
chrUn_gl00022014270514324114294522.1035
rDNA41885864218.9678
chrUn_gl00022013161913202813183218.5948
rDNA14602234168417.5099
rDNA12483149521373916.2462
rDNA41533423894213715.4913
rDNA63167213650713.0434
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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