DNA Damage Atlas

GSM4260264-EdU-seq-WT_rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10874230


Source Project ID:   

GSE143481

Cell Type:   

DLD-1


Organism:   

Homo sapiens


Genotype:   

MTBP-mAID/MTBP-WT-FLAG


Cell Phase:   

S


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 4000


Technique:   

EdU-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022014268714325614296920.0952/
rDNA28037292292853914.5936/
rDNA31097326133238314.44/
rDNA23136238212357414.2669/
rDNA39991413374036013.1418/
rDNA4144242389421459.59738/
rDNA3477389836868.82107/
rDNA3829539015385108.55121/
chrUn_gl0002201315991320281318126.83414/
rDNA1990320368201346.72538/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA23162238082357435.8063
rDNA28037292292853931.578
rDNA31097325953238327.8668
chrUn_gl00022014270514324114296922.1035
rDNA41885864818.9678
chrUn_gl00022013161913202813181218.5948
rDNA14602234188417.5099
rDNA12483149521374716.2462
rDNA41533423894214515.4913
rDNA63167213653013.0434
Download the Full Merged Peak List


Visualization

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Motif Analysis

Manual





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