DNA Damage Atlas


GSM4280348-WT-FRB_Break-seq_100_mM_HU_rep2




Basic Information

Manual

Sample ID:   

SRR10956366


Source Project ID:   

GSE144072

Organism:   

Saccharomyces cerevisiae


Treatment:   

Rapamycin + HU


Treatment Time:   

3hrs


Treatment Dose:   

8ug/ml + 100mM


Genotype:   

WT-FRB


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

Break-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrXII4894684908974902051457.98/
chrVIII211960216554214934276.125/
chrV443106449634444081156.903/
chrXV117389123990122868148.253/
chrXIII195976202501201932146.938/
chrXII475725482074477196142.412/
chrXVI561406269761981140.449/
chrIV109551111019581096796131.435/
chrI159250166583161004130.94/
chrXIII182061190466187101129.962/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrXII4894684908974902051457.98/
chrVIII211983216544214934277.871/
chrV443119449625444081157.284/
chrXIII195976202500201932146.96/
chrXII475728482008477196141.126/
chrXVI561456267561981140.894/
chrXIII19967324133.689/
chrIV109563011019531096796133.116/
chrXVI844108850570849080129.238/
chrXVI804540810662806725128.771/
Download the Full Merged Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab