DNA Damage Atlas

GSM4280349-INO80-FRB_Break-seq_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10956367


Source Project ID:   

GSE144072

Organism:   

Saccharomyces cerevisiae


Treatment:   

Rapamycin


Treatment Time:   

3hrs


Treatment Dose:   

8ug/ml


Genotype:   

INO80-FRB


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

Break-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrXII4894954908944902101673.36/
chrVIII211925216538212939422.962/
chrV443106449680443856266.003/
chrXIII195964202501201791253.509/
chrXVI560886275561914245.152/
chrXV117372123974122379244.647/
chrXII475699482658476433231.941/
chrXIII183968190382188956227.13/
chrI159928166476160697221.82/
chrXIII205850320219.85/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrXII4896664906924902102262/
chrVIII212099216400212939450.005/
chrV443251449559443856274.91/
chrXIII196137202390201791262.115/
chrXV117563123831122379253.764/
chrXVI562566260461914253.563/
chrXII475826481904476433250.721/
chrXIII184058190213188956234.261/
chrI160051166352160697228.317/
chrIV109564111018571100553225.88/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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