DNA Damage Atlas

GSM4280350-INO80-FRB_Break-seq_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10956368


Source Project ID:   

GSE144072

Organism:   

Saccharomyces cerevisiae


Treatment:   

Rapamycin


Treatment Time:   

3hrs


Treatment Dose:   

8ug/ml


Genotype:   

INO80-FRB


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

Break-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrXII4896664906924901762080.56/
chrVIII212099216400214794412.626/
chrV443251449559443972261.828/
chrXIII196137202390201782247.907/
chrXII475826481904476447245.764/
chrXVI562566260461901240.532/
chrXV117563123831122354235.034/
chrXIII184058190213188906226.515/
chrIV109564111018571100574226.12/
chrI160051166352160769219.914/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrXII4896664906924901762080.56/
chrVIII212099216400214794412.626/
chrV443251449559443972261.828/
chrXIII196137202390201782247.907/
chrXII475826481904476447245.764/
chrXVI562566260461901240.532/
chrXV117563123831122354235.034/
chrXIII184058190213188906226.515/
chrIV109564111018571100574226.12/
chrI160051166352160769219.914/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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