DNA Damage Atlas

GSM4280354-Mot1-FRB_Break-seq_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10956372


Source Project ID:   

GSE144072

Organism:   

Saccharomyces cerevisiae


Treatment:   

Rapamycin


Treatment Time:   

3hrs


Treatment Dose:   

8ug/ml


Genotype:   

Mot1-FRB


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

Break-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrXII4896634908194902233186.48/
chrIX3907763931493916641776.44/
chrXI6364864618641361285.79/
chrX7147027157057151891076.97/
chrV443182449535446434947.879/
chrXII475981481908477843929.936/
chrVIII212176216317215182885.59/
chrVII561629567758563968852.783/
chrXIII184073190260187047849.483/
chrIV987151992810988524828.329/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrXII4896634908194902233186.48/
chrIX3907763931493916641776.44/
chrXI6364864618641361285.79/
chrX7147027157057151891076.97/
chrV443182449535446434947.879/
chrXII475981481908477843929.936/
chrVIII212240216317215182899.046/
chrVII561629567758563968852.783/
chrXIII184073190235187047852.34/
chrXIII196199202232199226827.835/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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