DNA Damage Atlas


GSM4280503-WT_END-seq_with_MRN--Mn




Basic Information

Manual

Sample ID:   

SRR10956547


Source Project ID:   

GSE138915

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + MRN + MnCl2


Harvested Time:   

age: juvenile


Spike-in Intensity:   

no spike in


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.004429



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563966740176461202174.2722-
chrUn_GL4563895370156671067868.2221-
chr1293571526935809519357714618.4824-
chr514666073914667052914666670116.1993-
chr312893088812894040512893678913.3846-
chr1297055548970676729706144310.6053+
chrX1434770941434888701434830329.33159+
chr163082384330833398308296076.28206-
chr51476062301476155811476115416.25999-
chr87142726971437163714331655.68168-
Download the Full Peak List




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