DNA Damage Atlas

GSM4280504-ATM-KO_END-seq_with_ExoT--TDP2_rep2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10956548


Source Project ID:   

GSE138915

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

WT


In-situ Treatment:   

ExoT + TDP2


Harvested Time:   

age: 4 weeks


Spike-in Intensity:   

3.53356


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002484


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12935711569358077693577140313.506-
chr3128931037128937838128936788250.784-
chr8714275817143716871433170108.843-
chr1630825098308332573082960662.7258-
chr514666156014669029314666670057.7688-
chr514760602314761892314761154051.8988-
chrUn_GL4563966160172041201830.8456-
chr110073401710074252410073895330.3116-
chr990296446903049259030238428.9799-
chr656227998562374015623372427.4195-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12935711569358077693577140224.459-
chr3128931241128937838128936788164.718-
chr8714275817143716271433170120.118-
chr514666156014668948814666670076.6722-
chr514760602314761558814761154075.8425-
chrUn_GL4563966666172041201874.7382-
chr1630825098308332573082960671.6342-
chrUn_GL4563896416127471067844.6223-
chr990296446903049259030238433.4976-
chr1490907896909170879091120132.2317+
Download the Full Merged Peak List


Visualization

Manual





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