DNA Damage Atlas


GSM4280505-Hop2-KO_END-seq




Basic Information

Manual

Sample ID:   

SRR10956549


Source Project ID:   

GSE138915

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

Hop2-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

age: juvenile


Spike-in Intensity:   

3.522


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.003329



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr514666164814667179114666670786.2811-
chrUn_GL4563966104177751202353.0736-
chrUn_GL4563895001144231067826.519-
chr1293571351935809199357714116.827-
chr1297056276970659899706178612.5373-
chr614058307714059948614059260811.0309+
chr87142763271436741714331719.58288-
chr139538432995399681953931649.46741+
chr51476063541476153761476115419.34251-
chr31076090031076245561076157317.7196-
Download the Full Peak List




Copyright © 2023 All Rights Reserved by Wu lab