DNA Damage Atlas

GSM4280506-PRDM9-KO_END-seq_rep2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10956550


Source Project ID:   

GSE138915

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

Prdm9-/-


In-situ Treatment:   

Exo VII + Exo T


Harvested Time:   

age: juvenile


Spike-in Intensity:   

7.82061


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001498


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12935718339358084593577140188.043-
chr312893084012894039312893678899.0591-
chr514666112914667018714666670086.0904-
chrUn_GL4563967459176801202174.2867-
chr871427477714364347143317060.5974-
chrUn_GL4563895019153091067843.0498-
chr514760567114761535614761154027.9287-
chr1297056051970676379706144921.9634+
chr110073328110074281310073895315.343-
chr1630824498308336033082960615.342-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12935723499358084593577140110.391-
chr514666116114667018714666670083.6444-
chrUn_GL4563968709176801202177.0682-
chr312893132412894033812893678856.2041-
chr871427627714364347143317041.5876-
chrUn_GL4563896217153091067839.5104-
chr514760656314761451714761154025.8944-
chr1297056476970669069706144923.8997+
chrX14347952114348525814348303214.7997+
chr1486195075862010278619906314.7154-
Download the Full Merged Peak List


Visualization

Manual





Copyright © 2023 All Rights Reserved by Wu lab