DNA Damage Atlas

GSM4298926-GFP-UVSSA_WT_CPD-Xrseq_Rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11033295


Source Project ID:   

GSE132840

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

UV (254 nm)


Treatment Time:   

3hrs


Treatment Dose:   

20J/m2


Genotype:   

GFP-UVSSA


Harvested Time:   

3hrs


Layout:   

SINGLE


Instrument model:   

illumina NextSeq 500


Technique:   

XR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr51388568151388570251388569191531.7/
chr7107410514107410720107410616493.088/
chr19451001004510030245100200419.043/
chr17721997077219993572199820371.258/
chr9109249166109249368109249266335.235/
chr6150039180150039383150039280333.583/
chr1169141108169141312169141209331.948/
chr15779107397791094377910840331.948/
chr6160521641160521954160521796270.437/
chr1899903098999057189990439258.463/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr51388568151388570241388569191539.03/
chr7107410514107410720107410616493.088/
chr15779107397791094377910840331.948/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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