DNA Damage Atlas


GSM4298928-GFP-UVSSA_CIR




Basic Information

Manual

Sample ID:   

SRR11033297


Source Project ID:   

GSE132840

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

UV (254 nm)


Treatment Time:   

3hrs


Treatment Dose:   

20J/m2


Genotype:   

GFP-UVSSA ΔCIR


Harvested Time:   

3hrs


Layout:   

SINGLE


Instrument model:   

illumina NextSeq 500


Technique:   

XR-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr5138856815138857025138856919362.315/
chr17178613991786160417861500148.461/
chr7107410513107410721107410616146.319/
chr21343980013439820634398102129.903/
chr8128307094128307295128307193113.561/
chr8126351926126352128126352026112.999/
chr2251946682519487125194768112.443/
chr16226511322653172265214111.891/
chr15779107397791094477910840111.346/
chr7419956804199588541995781111.346/
Download the Full Peak List



Motif Analysis

Manual





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