DNA Damage Atlas

GSM4299161-EdU-seq-deltaC_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11033580


Source Project ID:   

GSE143481

Cell Type:   

DLD-1


Organism:   

Homo sapiens


Genotype:   

MTBP-mAID/MTBP-ΔC-FLAG


Cell Phase:   

S


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

EdU-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA23137238092357164.7824/
rDNA28011293922853847.1675/
rDNA31088326023201138.0885/
chrUn_gl00022013160413204613182429.0333/
rDNA14512150168526.4923/
rDNA40988264424.0397/
rDNA12490156321375323.9885/
rDNA16186170721639219.8008/
rDNA41442423804215517.1445/
chrUn_gl00022012770312835512793714.4501/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA28050288052853830.7904
rDNA23153237982357125.45
rDNA31105325863201116.0785
rDNA12989141831375314.4691
rDNA47085764411.7587
rDNA14762150168511.1998
rDNA63246730652010.3441
chrUn_gl00022014270314323114293410.1853
rDNA4148742380421559.134
chrUn_gl0002201360001369851362258.11787
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab