DNA Damage Atlas

GSM4299162-EdU-seq-deltaC_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11033581


Source Project ID:   

GSE143481

Cell Type:   

DLD-1


Organism:   

Homo sapiens


Genotype:   

MTBP-mAID/MTBP-ΔC-FLAG


Cell Phase:   

S


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 4000


Technique:   

EdU-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA23148238182356513.0427/
rDNA28050292212855510.4475/
rDNA1248314959136499.35271/
rDNA4108956518.70857/
chrUn_gl0002201297581301001299287.66544/
rDNA1439218016847.07579/
rDNA3108732610323816.98094/
chrUn_gl0002201426801434021429776.85855/
rDNA4010642394421695.60167/
chrUn_gl0002242078257123234.72676/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA28050288052855530.7904
rDNA23153237982356525.45
rDNA31105325863238116.0785
rDNA12989141831364914.4691
rDNA47085765111.7587
rDNA14762150168411.1998
chrUn_gl00022012975813010012992810.5636
rDNA63246730653910.3441
chrUn_gl00022014270314323114297710.1853
rDNA4148742380421699.134
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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