DNA Damage Atlas

GSM4299163-EdU-seq-deltaC_rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11033582


Source Project ID:   

GSE143481

Cell Type:   

DLD-1


Organism:   

Homo sapiens


Genotype:   

MTBP-mAID/MTBP-ΔC-FLAG


Cell Phase:   

S


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 4000


Technique:   

EdU-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA28015288052854212.2154/
rDNA23153237982358410.3787/
chrUn_gl0002201427031432311429769.22073/
rDNA3110532586319949.09887/
rDNA1418814810144687.12838/
chrUn_gl0002242126255923416.425/
rDNA3999141315403646.30368/
rDNA1992020344201316.15129/
rDNA4148742407421826.14238/
rDNA1298914183137135.93423/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA28050288052854230.7904
rDNA23153237982358425.45
rDNA31105325863199416.0785
rDNA14188148101446815.7734
rDNA12989141831371314.4691
rDNA47085766211.7587
rDNA14762150183711.1998
chrUn_gl00022012975813010012992510.5636
rDNA63246730651810.3441
chrUn_gl00022014270314323114297610.1853
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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