DNA Damage Atlas

GSM4304619-UD_Apn1Apn2_30min_AAG1_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11053396


Source Project ID:   

GSE134225

Organism:   

Saccharomyces cerevisiae


Strain:   

DF5, apn1Δ,apn2Δ


Treatment:   

hAAG, followed by APE1


Harvested Time:   

harvested at 30 min


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

GLOE-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM13762174881647125283.2-
chrM17635193711810522632.1+
chrM79105801617925122273-
chrM60367622086054321417.7-
chrM28427294682877020096.4-
chrM20307216812091419674.6+
chrM26042267722661618131+
chrM41283423584142517267.2+
chrM24540255772479816722.3-
chrM59415601625960716576.8-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM13775174861647125546-
chrM79105801617925122701.8-
chrM17689186741810522596.3+
chrM60367622086054322562.6-
chrM20307215972091420194.7+
chrM28427294682877020061.3-
chrM26042267722661618878.9+
chrM41283423584142518420.3+
chrM24540255772479817291.8-
chrM59415601625960716868.9-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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