DNA Damage Atlas


GSM4304643-Apn1Apn2_30min_AAG1_rep1




Basic Information

Manual

Sample ID:   

SRR11053420


Source Project ID:   

GSE134225

Organism:   

Saccharomyces cerevisiae


Strain:   

DF5, apn1Δ,apn2Δ


Treatment:   

MMS + hAAG, followed by APE1


Treatment Time:   

MMS: 0.02%


Harvested Time:   

harvested at 30 min


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

GLOE-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM13810194081643613614.6-
chrM79117801557933112244.3-
chrM20437211002076211325.4+
chrM60369622016042711181.4-
chrM28421294362876510526.3-
chrM2122421621214789864.83+
chrM4129442415419578922.42+
chrM2605326782266168697.9+
chrM5941760176597498502.33-
chrM3645737260369628324.7+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM16233170341643618879.5-
chrM79117801217933114219.4-
chrM20439209862076213252.5+
chrM59446601515974912617.2-
chrM7362774620744609895.6+
chrM2865329355287659264.48-
chrM3648137094369627537.76+
chrM2605326654266167303.6+
chrM4316443727436346579.32+
chrM2539625611255035993.89+
Download the Full Merged Peak List



Motif Analysis

Manual





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