DNA Damage Atlas


GSM4304648-Apn1Apn2_75min_AAG1_rep2




Basic Information

Manual

Sample ID:   

SRR11053425


Source Project ID:   

GSE134225

Organism:   

Saccharomyces cerevisiae


Strain:   

DF5, apn1Δ,apn2Δ


Treatment:   

MMS + hAAG, followed by APE1


Treatment Time:   

MMS: 0.02%


Harvested Time:   

harvested at 75 min


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

GLOE-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM13797145131398615926.8+
chrM16244170211645013938+
chrM59450601355996012360.2+
chrM79092801207923712306.4-
chrM20446209742063810560-
chrM61757621976190810400.9-
chrM2350223872236516948.48-
chrM7362774618744716834.65+
chrM1878319067188726700.38-
chrM4071841124408716506.45-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM16244170211645015784.4+
chrM13797145131398615352.4+
chrM79100801207923712791.8-
chrM20446209742063811950.9-
chrM59450601355996011236.5+
chrM18858190671887210741.8-
chrM60480613916063010363.1-
chrM6175762197619089810.76-
chrM7362774618744719065.97+
chrM2865129368292308245.55+
Download the Full Merged Peak List



Motif Analysis

Manual





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