DNA Damage Atlas


GSM4304659-WT_75min_AAG1_rep1




Basic Information

Manual

Sample ID:   

SRR11053436


Source Project ID:   

GSE134225

Organism:   

Saccharomyces cerevisiae


Strain:   

DF5, wildtype


Treatment:   

MMS + hAAG, followed by APE1


Treatment Time:   

MMS: 0.02%


Harvested Time:   

harvested at 75 min


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

GLOE-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrXII4596304607024605035839.02+
chrM7911680147792435472.81-
chrM1381419377164365386.39-
chrM2044621605207624545.36+
chrM6038862193608794526.22-
chrM2843429433292514487.31+
chrM4129442390417623944.49+
chrM3646137249369623749.86+
chrM2607026755262363664.8-
chrM5942360165596073657.31-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrXII4596304607024605036597.37+
chrM7911680147792436009.94-
chrM1577317511164365946.26-
chrM2044621105207625181.45+
chrM7360574679742914691.59+
chrM6038862193608794677.05-
chrM2844029415292514636.65+
chrM5942760165596074021.93-
chrM2607026755262363904.03-
chrM4130942369417623795.47+
Download the Full Merged Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab