DNA Damage Atlas

GSM4305466-WT_siLIG1_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11058554


Source Project ID:   

GSE134225

Cell Type:   

HCT116


Organism:   

Homo sapiens


Treatment:   

siRNA LIG1


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

GLOE-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM15947167331610548751.3-
chrM04375735215.3-
chrM2916334732562318.95-
chrM5655585757731048.76-
chrM98081065310052777.337-
chrM846486648548661.218+
chrM485055485396589.419-
chr1551504695515049185150475950.1059+
rDNA41953422754210148.776-
rDNA13319143311367727.7383-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM15947165641610578571.5-
chrM04375739487.8-
chrM2995334732562830.03-
chrM5655585757731086.48-
chrM531755465396914.603-
chrM98081063410052798.593-
chrM846486648548720.204+
rDNA41953422754210147.4146-
chr1551504695515049015150475939.1426+
rDNA13332143311367730.101-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab