DNA Damage Atlas

GSM4322005-Caco-2_no_treatment_rep1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11119448


Source Project ID:   

GSE145594

Cell Type:   

Caco-2


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

sBLISS


Others:   

barcode: CATCAATC ; library: BB76


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1_gl000192_random341711342061341913601.339-
chr11765058047650600676505804572.21+
chr13510375145103771751037514536.465+
chr1221733110221733310221733110532.285+
chr15583023345830253558302334528.825+
chr7938784109387873193878727479.433-
chr8756713107567159575671553432.452-
chr3157579067157579270157579268429.654-
chr19459547094595494545954938424.839-
chr2103737817103738155103737817424.45+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr10109045205109045452109045413415.458-
chr1235666649235667075235666824124.875+
chr14500870255008724450087025116.691+
chr1352586321525865275258652693.4575-
chr2060936700609372716093727170.4052-
chr1185955176859555278595523067.5811-
chr9_gl000199_random98713991639901363.0862-
chr2140685981406861024068600561.4439+
chr1011994106311994140911994117160.9254+
chr652535737525360835253595859.7318-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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