Sample Detail

Basic Information

Manual

Sample ID:

SRR11119449

Source Project ID:

GSE145594

Cell Type:

Caco-2

Organism:

Homo sapiens

Treatment:

Etoposide

Treatment Time:

3hrs

Treatment Dose:

50uM

Layout:

SINGLE

Instrument model:

Illumina NextSeq 500

Technique:

sBLISS

Others:

barcode: GTCGTATC ; library: BB76

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Telomere Analysis

Manual


Ratio of (G-rich strand/C-rich strand): 0

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr7	119755213	119755418	119755415	1238.05	-
chr7	14368472	14368672	14368472	985.901	+
chr6	130688764	130688989	130688965	849.131	-
chr21	16567785	16568366	16568163	766.242	-
chr14	25355592	25355795	25355792	698.118	-
chr8	140522242	140522443	140522242	502.441	+
chr6	154165293	154165496	154165494	500.753	-
chr3	85308893	85309124	85309123	466.574	-
chr9	90862082	90862285	90862283	461.606	-
chr11	57538594	57538798	57538794	456.097	-

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr2	176046521	176046533	176046521	414.98	+
chr10	109045211	109045450	109045413	254.017	-
chr9	140405448	140405508	140405448	100.344	+
chr14	94546944	94547174	94546952	83.8695	+
chr17	48938653	48939079	48938955	82.9809	-
chr2	191045052	191045233	191045116	81.7305	+
chr20	30945177	30945936	30945408	71.5862	+
chr15	35838004	35838349	35838241	69.1798	+
chr14	77735997	77736206	77736168	64.5829	-
chr20	62313766	62314110	62313965	63.8907	-

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download