Sample Detail

Basic Information

Manual

Sample ID:

SRR11119450

Source Project ID:

GSE145594

Cell Type:

Caco-2

Organism:

Homo sapiens

Treatment:

pks+ E.coli infection

Treatment Time:

3hrs

Treatment Dose:

MOI20

Layout:

SINGLE

Instrument model:

Illumina NextSeq 500

Technique:

sBLISS

Others:

barcode: ACGACATC ; library: BB77

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Telomere Analysis

Manual


Ratio of (G-rich strand/C-rich strand): 0

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr1	157336855	157337066	157337056	875.186	-
chr17	30036654	30036858	30036855	723.064	-
chr16	11036828	11037093	11037090	717.489	-
chr10	80432881	80433089	80432881	707.346	+
chr13	88888801	88889141	88889003	635.224	-
chr12	132435022	132435282	132435280	625.366	-
chr5	81985791	81985991	81985791	585.682	+
chr15	33950716	33950932	33950929	541.425	-
chr2	174088353	174088556	174088555	536.142	-
chr13	29957970	29958175	29958172	525.391	-

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr15	66795583	66795794	66795586	174.517	+
chr10	109045212	109045437	109045413	171.319	-
chr20	61455147	61455169	61455169	129.222	-
chr14	94546953	94547154	94546953	109.104	+
chr12	66451233	66451466	66451445	101.204	-
chr6_mann_hap4	1218615	1218822	1218617	61.7351	+
chr17	45887570	45887971	45887858	60.8979	+
chr19	13263878	13264164	13264058	58.3202	+
chr6	160521615	160521974	160521823	56.7569	-
chr4	82515243	82515451	82515450	51.6662	-

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download