Sample Detail

Basic Information

Manual

Sample ID:

SRR11119451

Source Project ID:

GSE145594

Cell Type:

Caco-2

Organism:

Homo sapiens

Treatment:

pks- E.coli infection

Treatment Time:

3hrs

Treatment Dose:

MOI20

Layout:

SINGLE

Instrument model:

Illumina NextSeq 500

Technique:

sBLISS

Others:

barcode: TGATGATC ; library: BB77

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Telomere Analysis

Manual


Ratio of (G-rich strand/C-rich strand): 0.001527

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr1	45106162	45106365	45106162	973.256	+
chr5	38431225	38431435	38431427	804.889	-
chr2	30980072	30980274	30980072	665.903	+
chr11	125975335	125975535	125975335	662.301	+
chr11	27536503	27536706	27536704	627.699	-
chr1	118801744	118801945	118801744	621.879	+
chr5	179827185	179827388	179827185	562.448	+
chr14	23541817	23542102	23541900	521.724	+
chr7	107859222	107859424	107859423	518.13	-
chr9	86991492	86991701	86991693	502.561	-

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr10	109045205	109045447	109045413	151.684	-
chr12	66451231	66451593	66451458	104.612	-
rDNA	3518	6175	4415	101.873	+
chr10	119941155	119941406	119941183	88.8264	+
chr4	1708950	1709168	1708950	77.1897	+
chr1	155022973	155023228	155023027	75.9887	+
chr10	106028998	106029249	106028998	59.3609	+
chr7	107410501	107410841	107410715	57.3754	-
chr6	160521460	160521968	160521831	51.9328	-
chr6_mann_hap4	1218487	1218824	1218617	51.5962	+

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download