Sample Detail

Basic Information

Manual

Sample ID:

SRR11119453

Source Project ID:

GSE145594

Cell Type:

Caco-2

Organism:

Homo sapiens

Treatment:

Etoposide

Treatment Time:

3hrs

Treatment Dose:

50uM

Layout:

SINGLE

Instrument model:

Illumina NextSeq 500

Technique:

sBLISS

Others:

barcode: GTCGTATC ; library: BB78

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Telomere Analysis

Manual


Ratio of (G-rich strand/C-rich strand): 0

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr12	33047363	33047566	33047363	658.615	+
chr3	108001958	108002179	108001978	624.304	+
chr1	96608746	96608946	96608746	601.896	+
chr2	216781427	216781718	216781427	557.036	+
chr6	34889834	34890034	34889834	527.759	+
chr2	176595621	176595823	176595821	516.313	-
chr22	20113558	20113764	20113759	502.627	-
chr7	133431000	133431201	133431001	488.874	+
chr17	20979378	20979580	20979378	472.768	+
chr11	129504995	129505196	129504995	470.119	+

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr10	109045211	109045450	109045413	254.017	-
chr7	72935094	72935294	72935094	179.521	+
chr5	43042614	43042942	43042697	168.158	+
chr16	87648292	87648514	87648292	99.6128	+
chr14	94546944	94547174	94546972	83.8695	+
chr17	48938653	48939079	48938862	82.9809	-
chr20	30945177	30945936	30945561	71.5862	+
chr15	35838004	35838349	35838327	69.1798	+
chr14	77735997	77736206	77736202	64.5829	+
chr20	62313766	62314110	62313965	63.8907	-

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download