DNA Damage Atlas

GSM4322013-Caco-2_no_treatment_rep3

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11119456


Source Project ID:   

GSE145594

Cell Type:   

Caco-2


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

sBLISS


Others:   

barcode: CATCAATC ; library: BB82


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.003401


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr157204785272048055720478521402.35+
chr186519336165193566651933611125.18+
chr122486194024862175248621711066.02-
chr2179966888179967093179967089924.354-
chr7574849555748515557484955859.87+
chr10236154702361567523615671853.14-
chr11118959696118959908118959897801.557-
chr1192107561921095819210756786.312+
chr5843070898430729284307264752.234-
chr14934542279345442993454227742.949+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr10109045205109045452109045413415.458-
chr1352586321525865275258652693.4575-
chr1688991716889917718899176583.6818+
chr2060936700609372716093714670.4052-
chr1185955176859555278595525767.5811+
chr9_gl000199_random98713991639899463.0862-
chr2140685981406861024068608361.4439-
chr1011994106311994140911994118060.9254+
chr652535737525360835253595259.7318-
chr210192533410192556010192541353.9807-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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