Sample Detail

Basic Information

Manual

Sample ID:

SRR11119457

Source Project ID:

GSE145594

Cell Type:

Caco-2

Organism:

Homo sapiens

Treatment:

Etoposide

Treatment Time:

3hrs

Treatment Dose:

50uM

Layout:

SINGLE

Instrument model:

Illumina NextSeq 500

Technique:

sBLISS

Others:

barcode: GTCGTATC ; library: BB82

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Telomere Analysis

Manual


Ratio of (G-rich strand/C-rich strand): 0

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr12	132873710	132873911	132873710	2922.42	+
chr2	152919188	152919396	152919389	2182.67	-
chr5	65892274	65892477	65892475	1630.73	-
chr12	9747629	9747834	9747830	1486.12	-
chr10	65921780	65921980	65921780	1485.94	+
chrX	41844635	41844839	41844836	1347	-
chr1	230221512	230221714	230221512	1264.22	+
chr18	19781052	19781256	19781253	1242.07	-
chr7	3374764	3374968	3374965	1212.78	-
chr3	52522198	52522403	52522198	1192.3	+

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr2	216484191	216484192	216484191	840.768	-
chr2	176046521	176046533	176046531	414.98	-
chr10	109045211	109045450	109045413	254.017	-
chr7	72935094	72935294	72935138	179.521	+
chr9	140405448	140405508	140405480	100.344	-
chr16	87648292	87648514	87648445	99.6128	+
chr14	94546944	94547174	94546944	83.8695	+
chr17	48938653	48939079	48938653	82.9809	+
chr2	191045052	191045233	191045052	81.7305	+
chr20	30945177	30945936	30945617	71.5862	+

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download