Sample Detail

Basic Information

Manual

Sample ID:

SRR11119458

Source Project ID:

GSE145594

Cell Type:

Caco-2

Organism:

Homo sapiens

Treatment:

pks+ E.coli infection

Treatment Time:

3hrs

Treatment Dose:

MOI20

Layout:

SINGLE

Instrument model:

Illumina NextSeq 500

Technique:

sBLISS

Others:

barcode: ACGACATC ; library: BB83

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Telomere Analysis

Manual


Ratio of (G-rich strand/C-rich strand): 0

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr2	98833134	98833337	98833334	4090.83	-
chr15	42325039	42325265	42325063	3051.9	+
chr17	2816476	2816680	2816678	2040.22	-
chr2	47763871	47764076	47764071	1921.22	-
chr4	183189299	183189510	183189500	1748.17	-
chr14	25355272	25355475	25355473	1344.18	-
chr20	25528817	25529017	25528817	1308.45	+
chr5	155450175	155450377	155450175	1295.49	+
chr2	84851823	84852023	84851823	1219.69	+
chr10	52839748	52839950	52839748	1210.86	+

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr10	109045212	109045437	109045413	171.319	-
chr15	96595370	96595487	96595370	162.517	+
chr20	61455147	61455169	61455169	129.222	+
chr12	66451233	66451466	66451431	101.204	-
chr20	42827577	42827777	42827577	72.3204	+
chr6_mann_hap4	1218615	1218822	1218615	61.7351	+
chr17	45887570	45887971	45887770	60.8979	+
chr19	13263878	13264164	13263962	58.3202	+
chr6	160521615	160521974	160521819	56.7569	-
chr4	82515243	82515451	82515450	51.6662	-

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download