DNA Damage Atlas

GSM4322016-Caco-2_pks_minus_E.coli_rep3

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11119459


Source Project ID:   

GSE145594

Cell Type:   

Caco-2


Organism:   

Homo sapiens


Treatment:   

pks- E.coli infection


Treatment Time:   

3hrs


Treatment Dose:   

MOI20


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

sBLISS


Others:   

barcode: TGATGATC ; library: BB83


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr11197624091976261419762609872.991-
chr11420350294203523642035232678.717-
chr19890281890488890482608.306-
chr3672131036721330367213103606.898+
chr1206618459206618734206618459603.857+
chr8112879830112880036112880031589.221-
chr2388822493888245238882450566.149-
chr8470121714701237247012171558.706+
chr17701149627011516370114962555.14+
chr10110505969110506240110506170540.472-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr10109045205109045447109045413151.684-
chr7258913692589157025891369110.284+
rDNA8724110219455108.743-
chr12664512316645159366451430104.612-
rDNA351861755012101.873+
chr1011994115511994140611994120488.8264+
chr417089501709168170896177.1897+
chr115502297315502322815502305675.9887+
chr1185780783857810068578088966.2818+
chr1010602899810602924910602906759.3609+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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