DNA Damage Atlas

GSM4322017-Caco-2_no_treatment_tech_rep2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11119460


Source Project ID:   

GSE145594

Cell Type:   

Caco-2


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

sBLISS


Others:   

barcode: CATCAATC ; library: BB78b ; biological replicate: Technical replicate of biological replicate 2


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr5238379012383810123837901901.622+
chr13815365628153676581536763886.306-
chr6517890905178929751789291753.939-
chr5101785636101785837101785636718.111+
chr1593286859330705932868700.545+
chr19462051284620537846205376672.78-
chr11908745769087477890874777660.514-
chr8702862937028649770286293632.237+
chr10109644081096488510964801620.458-
chr22507570795075727950757079616.58+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr10109045205109045452109045413415.458-
chr1235666649235667075235666720124.875+
chr14500870255008724450087047116.691+
chr1352586321525865275258652693.4575-
chr1688991716889917718899176683.6818-
chr2060936700609372716093714670.4052-
chr1185955176859555278595522467.5811+
chr9_gl000199_random98713991639901363.0862-
chr2140685981406861024068600661.4439-
chr1011994106311994140911994117860.9254+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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