Sample Detail

Basic Information

Manual

Sample ID:

SRR11119462

Source Project ID:

GSE145594

Cell Type:

Caco-2

Organism:

Homo sapiens

Treatment:

pks+ E.coli infection

Treatment Time:

3hrs

Treatment Dose:

MOI20

Layout:

SINGLE

Instrument model:

Illumina NextSeq 500

Technique:

sBLISS

Others:

barcode: ACGACATC ; library: BB79b ; biological replicate: Technical replicate of biological replicate 2

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Telomere Analysis

Manual


Ratio of (G-rich strand/C-rich strand): 0.008403

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr12	29388127	29388331	29388328	768.129	-
chr6	39078106	39078311	39078308	766.694	-
chr6	14958866	14959068	14958866	641.946	+
chr10	4507222	4507425	4507222	512.662	+
chr8	32605676	32605882	32605877	495.99	-
chr17	49662047	49662390	49662247	490.021	-
chrX	74796193	74796394	74796193	450.536	+
chr7	103321252	103321656	103321252	437.744	+
chr12	125861354	125861556	125861354	435.397	+
chr10	20220891	20221270	20221015	425.336	+

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr15	66795583	66795794	66795586	174.517	+
chr10	109045212	109045437	109045413	171.319	-
chr15	96595370	96595487	96595484	162.517	-
chr20	61886576	61886608	61886598	158.933	+
chr14	94546953	94547154	94546973	109.104	+
chr12	66451233	66451466	66451439	101.204	-
chr6_mann_hap4	1218615	1218822	1218617	61.7351	+
chr17	45887570	45887971	45887882	60.8979	+
chr19	13263878	13264164	13264056	58.3202	+
chr6	160521615	160521974	160521822	56.7569	-

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download