DNA Damage Atlas

GSM4322020-Caco-2_pks_minus_E.coli_tech_rep2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11119463


Source Project ID:   

GSE145594

Cell Type:   

Caco-2


Organism:   

Homo sapiens


Treatment:   

pks- E.coli infection


Treatment Time:   

3hrs


Treatment Dose:   

MOI20


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

sBLISS


Others:   

barcode: TGATGATC ; library: BB79b ; biological replicate: Technical replicate of biological replicate 2


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1605805076058070860580507945.197+
chr12298944182989461929894418768.17+
chr6449226704492287344922871702.696-
chr6678742466787444667874246694.175+
chr16798621179864147986212643.225+
chr2157578632157578943157578632640.508+
chr2968381669683841696838166618.88+
chr9348394533483965834839654607.504-
chr5516503915165059551650593566.877-
chr13458826514588285545882655548.188+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr10109045205109045447109045413151.684-
rDNA8724110219654108.743+
chr12664512316645159366451464104.612-
rDNA351861755575101.873-
chr1015001225150013131500125697.0381+
chr1011994115511994140611994120488.8264+
chr417089501709168170895977.1897+
chr115502297315502322815502302775.9887+
chr1185780783857810068578100566.2818-
chr710741050110741084110741071557.3754-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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