DNA Damage Atlas

GSM4322021-Caco-2_no_treatment_rep4

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11119464


Source Project ID:   

GSE145594

Cell Type:   

Caco-2


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

sBLISS


Others:   

barcode: GCTTGGAG ; library: BB191


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr10109045201109045783109045413244.749-
chr6699824976998270169982497229.624+
chr3972204249722062597220424184.155+
chr6130470108130470513130470500170.815-
chr4163401249163401628163401483168.388-
chr20306417883064227530642141160.924-
chr2177210056177210747177210616158.486-
chr1200506424200506627200506625146.501-
chr1344687883446914034468788142.143+
chr6144221878144222078144222078128.915-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr10109045205109045452109045413415.458-
chr1235666649235667075235666701124.875+
chr14500870255008724450087128116.691+
chr1352586321525865275258652693.4575-
chr1185955176859555278595525667.5811+
chr9_gl000199_random98713991639901363.0862-
chr2140685981406861024068604161.4439-
chr1011994106311994140911994116160.9254+
chr652535737525360835253581859.7318-
chr210192533410192556010192548653.9807-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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